A white spruce gene catalog for conifer genome analyses.
Identifieur interne : 003008 ( Main/Exploration ); précédent : 003007; suivant : 003009A white spruce gene catalog for conifer genome analyses.
Auteurs : Philippe Rigault [Canada] ; Brian Boyle ; Pierre Lepage ; Janice E K. Cooke ; Jean Bousquet (allergologue) [France] ; John J. MackaySource :
- Plant physiology [ 1532-2548 ] ; 2011.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Complementary, RNA, Messenger.
- genetics : Tracheophyta.
- Evolution, Molecular, Expressed Sequence Tags, Genome, Plant, Multigene Family.
Abstract
Several angiosperm plant genomes, including Arabidopsis (Arabidopsis thaliana), rice (Oryza sativa), poplar (Populus trichocarpa), and grapevine (Vitis vinifera), have been sequenced, but the lack of reference genomes in gymnosperm phyla reduces our understanding of plant evolution and restricts the potential impacts of genomics research. A gene catalog was developed for the conifer tree Picea glauca (white spruce) through large-scale expressed sequence tag sequencing and full-length cDNA sequencing to facilitate genome characterizations, comparative genomics, and gene mapping. The resource incorporates new and publicly available sequences into 27,720 cDNA clusters, 23,589 of which are represented by full-length insert cDNAs. Expressed sequence tags, mate-pair cDNA clone analysis, and custom sequencing were integrated through an iterative process to improve the accuracy of clustering outcomes. The entire catalog spans 30 Mb of unique transcribed sequence. We estimated that the P. glauca nuclear genome contains up to 32,520 transcribed genes owing to incomplete, partially sequenced, and unsampled transcripts and that its transcriptome could span up to 47 Mb. These estimates are in the same range as the Arabidopsis and rice transcriptomes. Next-generation methods confirmed and enhanced the catalog by providing deeper coverage for rare transcripts, by extending many incomplete clusters, and by augmenting the overall transcriptome coverage to 38 Mb of unique sequence. Genomic sample sequencing at 8.5% of the 19.8-Gb P. glauca genome identified 1,495 clusters representing highly repeated sequences among the cDNA clusters. With a conifer transcriptome in full view, functional and protein domain annotations clearly highlighted the divergences between conifers and angiosperms, likely reflecting their respective evolutionary paths.
DOI: 10.1104/pp.111.179663
PubMed: 21730200
PubMed Central: PMC3165865
Affiliations:
- Canada, France
- Languedoc-Roussillon, Occitanie (région administrative)
- Montpellier
- Centre hospitalier universitaire de Montpellier, Université de Montpellier
Links toward previous steps (curation, corpus...)
Le document en format XML
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Cooke</name></author><author><name sortKey="Bousquet, Jean" sort="Bousquet, Jean" uniqKey="Bousquet J" first="Jean" last="Bousquet">Jean Bousquet (allergologue)</name><affiliation><country>France</country><placeName><settlement type="city">Montpellier</settlement><region type="old region" nuts="2">Languedoc-Roussillon</region><region type="region" nuts="2">Occitanie (région administrative)</region></placeName><orgName type="hospital" n="4">Centre hospitalier universitaire de Montpellier</orgName><orgName type="institution">Université de Montpellier</orgName></affiliation></author><author><name sortKey="Mackay, John J" sort="Mackay, John J" uniqKey="Mackay J" first="John J" last="Mackay">John J. Mackay</name></author></analytic><series><title level="j">Plant physiology</title><idno type="eISSN">1532-2548</idno><imprint><date when="2011" type="published">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>DNA, Complementary (genetics)</term><term>Evolution, Molecular (MeSH)</term><term>Expressed Sequence Tags (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Multigene Family (MeSH)</term><term>RNA, Messenger (genetics)</term><term>Tracheophyta (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN complémentaire (génétique)</term><term>ARN messager (génétique)</term><term>Famille multigénique (MeSH)</term><term>Génome végétal (MeSH)</term><term>Tracheobionta (génétique)</term><term>Étiquettes de séquences exprimées (MeSH)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Complementary</term><term>RNA, Messenger</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Tracheophyta</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN complémentaire</term><term>ARN messager</term><term>Tracheobionta</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Evolution, Molecular</term><term>Expressed Sequence Tags</term><term>Genome, Plant</term><term>Multigene Family</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Famille multigénique</term><term>Génome végétal</term><term>Étiquettes de séquences exprimées</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Several angiosperm plant genomes, including Arabidopsis (Arabidopsis thaliana), rice (Oryza sativa), poplar (Populus trichocarpa), and grapevine (Vitis vinifera), have been sequenced, but the lack of reference genomes in gymnosperm phyla reduces our understanding of plant evolution and restricts the potential impacts of genomics research. A gene catalog was developed for the conifer tree Picea glauca (white spruce) through large-scale expressed sequence tag sequencing and full-length cDNA sequencing to facilitate genome characterizations, comparative genomics, and gene mapping. The resource incorporates new and publicly available sequences into 27,720 cDNA clusters, 23,589 of which are represented by full-length insert cDNAs. Expressed sequence tags, mate-pair cDNA clone analysis, and custom sequencing were integrated through an iterative process to improve the accuracy of clustering outcomes. The entire catalog spans 30 Mb of unique transcribed sequence. We estimated that the P. glauca nuclear genome contains up to 32,520 transcribed genes owing to incomplete, partially sequenced, and unsampled transcripts and that its transcriptome could span up to 47 Mb. These estimates are in the same range as the Arabidopsis and rice transcriptomes. Next-generation methods confirmed and enhanced the catalog by providing deeper coverage for rare transcripts, by extending many incomplete clusters, and by augmenting the overall transcriptome coverage to 38 Mb of unique sequence. Genomic sample sequencing at 8.5% of the 19.8-Gb P. glauca genome identified 1,495 clusters representing highly repeated sequences among the cDNA clusters. With a conifer transcriptome in full view, functional and protein domain annotations clearly highlighted the divergences between conifers and angiosperms, likely reflecting their respective evolutionary paths.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21730200</PMID><DateCompleted><Year>2012</Year><Month>01</Month><Day>30</Day></DateCompleted><DateRevised><Year>2019</Year><Month>12</Month><Day>10</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1532-2548</ISSN><JournalIssue CitedMedium="Internet"><Volume>157</Volume><Issue>1</Issue><PubDate><Year>2011</Year><Month>Sep</Month></PubDate></JournalIssue><Title>Plant physiology</Title><ISOAbbreviation>Plant Physiol</ISOAbbreviation></Journal><ArticleTitle>A white spruce gene catalog for conifer genome analyses.</ArticleTitle><Pagination><MedlinePgn>14-28</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1104/pp.111.179663</ELocationID><Abstract><AbstractText>Several angiosperm plant genomes, including Arabidopsis (Arabidopsis thaliana), rice (Oryza sativa), poplar (Populus trichocarpa), and grapevine (Vitis vinifera), have been sequenced, but the lack of reference genomes in gymnosperm phyla reduces our understanding of plant evolution and restricts the potential impacts of genomics research. A gene catalog was developed for the conifer tree Picea glauca (white spruce) through large-scale expressed sequence tag sequencing and full-length cDNA sequencing to facilitate genome characterizations, comparative genomics, and gene mapping. The resource incorporates new and publicly available sequences into 27,720 cDNA clusters, 23,589 of which are represented by full-length insert cDNAs. Expressed sequence tags, mate-pair cDNA clone analysis, and custom sequencing were integrated through an iterative process to improve the accuracy of clustering outcomes. The entire catalog spans 30 Mb of unique transcribed sequence. We estimated that the P. glauca nuclear genome contains up to 32,520 transcribed genes owing to incomplete, partially sequenced, and unsampled transcripts and that its transcriptome could span up to 47 Mb. These estimates are in the same range as the Arabidopsis and rice transcriptomes. Next-generation methods confirmed and enhanced the catalog by providing deeper coverage for rare transcripts, by extending many incomplete clusters, and by augmenting the overall transcriptome coverage to 38 Mb of unique sequence. Genomic sample sequencing at 8.5% of the 19.8-Gb P. glauca genome identified 1,495 clusters representing highly repeated sequences among the cDNA clusters. With a conifer transcriptome in full view, functional and protein domain annotations clearly highlighted the divergences between conifers and angiosperms, likely reflecting their respective evolutionary paths.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Rigault</LastName><ForeName>Philippe</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Gydle, Inc., Quebec, Canada G1T 1Z2. prigault@gydle.com</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Boyle</LastName><ForeName>Brian</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Lepage</LastName><ForeName>Pierre</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Cooke</LastName><ForeName>Janice E K</ForeName><Initials>JE</Initials></Author><Author ValidYN="Y"><LastName>Bousquet</LastName><ForeName>Jean</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>MacKay</LastName><ForeName>John 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PubStatus="entrez"><Year>2011</Year><Month>7</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2011</Year><Month>7</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2012</Year><Month>1</Month><Day>31</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">21730200</ArticleId><ArticleId IdType="pii">pp.111.179663</ArticleId><ArticleId IdType="doi">10.1104/pp.111.179663</ArticleId><ArticleId IdType="pmc">PMC3165865</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>BMC Genomics. 2008;9:312</Citation><ArticleIdList><ArticleId IdType="pubmed">18590545</ArticleId></ArticleIdList></Reference><Reference><Citation>Biotechniques. 2001 Apr;30(4):892-7</Citation><ArticleIdList><ArticleId IdType="pubmed">11314272</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2008 Aug;17(16):3599-613</Citation><ArticleIdList><ArticleId IdType="pubmed">18662225</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2008;9:383</Citation><ArticleIdList><ArticleId IdType="pubmed">18691438</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2008 Nov;36(19):e122</Citation><ArticleIdList><ArticleId IdType="pubmed">18753151</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2008;9:484</Citation><ArticleIdList><ArticleId IdType="pubmed">18854048</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Mol Biol. 2009 Jan;69(1-2):179-94</Citation><ArticleIdList><ArticleId IdType="pubmed">18937034</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2008;180(4):766-86</Citation><ArticleIdList><ArticleId IdType="pubmed">18811621</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2009;4(2):e4332</Citation><ArticleIdList><ArticleId IdType="pubmed">19194510</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2009;10:41</Citation><ArticleIdList><ArticleId IdType="pubmed">19159482</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Genet. 2009 Nov;5(11):e1000740</Citation><ArticleIdList><ArticleId IdType="pubmed">19936069</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2009 Nov 20;326(5956):1112-5</Citation><ArticleIdList><ArticleId IdType="pubmed">19965430</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2010 Jan;38(Database issue):D211-22</Citation><ArticleIdList><ArticleId IdType="pubmed">19920124</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2010;11:180</Citation><ArticleIdList><ArticleId IdType="pubmed">20233449</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Genet. 2000 Jun;25(2):232-4</Citation><ArticleIdList><ArticleId IdType="pubmed">10835644</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2001 Jan 1;29(1):159-64</Citation><ArticleIdList><ArticleId IdType="pubmed">11125077</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2000 Dec 14;408(6814):796-815</Citation><ArticleIdList><ArticleId IdType="pubmed">11130711</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2001 Feb 8;409(6821):685-90</Citation><ArticleIdList><ArticleId IdType="pubmed">11217851</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2002 Apr 5;296(5565):79-92</Citation><ArticleIdList><ArticleId IdType="pubmed">11935017</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2002 Apr 5;296(5565):92-100</Citation><ArticleIdList><ArticleId IdType="pubmed">11935018</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2002;3(6):RESEARCH0029</Citation><ArticleIdList><ArticleId IdType="pubmed">12093376</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):7383-8</Citation><ArticleIdList><ArticleId IdType="pubmed">12771380</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2003 Dec;13(12):2725-35</Citation><ArticleIdList><ArticleId IdType="pubmed">14613979</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2004 Jan 1;32(Database issue):D354-9</Citation><ArticleIdList><ArticleId IdType="pubmed">14681433</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2004;32(3):e37</Citation><ArticleIdList><ArticleId IdType="pubmed">14973331</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2004 Dec;21(12):2232-45</Citation><ArticleIdList><ArticleId IdType="pubmed">15317878</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 1998 Mar;8(3):186-94</Citation><ArticleIdList><ArticleId IdType="pubmed">9521922</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 1998 Aug 4;95(16):9693-8</Citation><ArticleIdList><ArticleId IdType="pubmed">9689143</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 1999 Sep;9(9):868-77</Citation><ArticleIdList><ArticleId IdType="pubmed">10508846</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2005 Oct;15(10):1431-40</Citation><ArticleIdList><ArticleId IdType="pubmed">16204196</ArticleId></ArticleIdList></Reference><Reference><Citation>Tree Physiol. 2006 Jan;26(1):1-16</Citation><ArticleIdList><ArticleId IdType="pubmed">16203709</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2005;6:144</Citation><ArticleIdList><ArticleId IdType="pubmed">16236172</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Mol Biol. 2006 Jan;60(1):69-85</Citation><ArticleIdList><ArticleId IdType="pubmed">16463100</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2006 Sep 15;313(5793):1596-604</Citation><ArticleIdList><ArticleId IdType="pubmed">16973872</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Mol Biol. 2006 Nov;62(4-5):485-501</Citation><ArticleIdList><ArticleId IdType="pubmed">17001497</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2007;7:17</Citation><ArticleIdList><ArticleId IdType="pubmed">17397551</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2007;8:134</Citation><ArticleIdList><ArticleId IdType="pubmed">17535431</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2007 Jul;35(Web Server issue):W159-62</Citation><ArticleIdList><ArticleId IdType="pubmed">17526512</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2007 Sep 27;449(7161):463-7</Citation><ArticleIdList><ArticleId IdType="pubmed">17721507</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2008;9:21</Citation><ArticleIdList><ArticleId IdType="pubmed">18205909</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2008;9:5</Citation><ArticleIdList><ArticleId IdType="pubmed">18179701</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol Evol. 2010;2:488-503</Citation><ArticleIdList><ArticleId IdType="pubmed">20644220</ArticleId></ArticleIdList></Reference><Reference><Citation>J Exp Bot. 2010 Sep;61(14):3847-64</Citation><ArticleIdList><ArticleId IdType="pubmed">20732878</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2010;11:571</Citation><ArticleIdList><ArticleId IdType="pubmed">20950480</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2010;11:650</Citation><ArticleIdList><ArticleId IdType="pubmed">21092232</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2010;10:273</Citation><ArticleIdList><ArticleId IdType="pubmed">21143995</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Rev Genet. 2011 Feb;12(2):111-22</Citation><ArticleIdList><ArticleId IdType="pubmed">21245829</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2011;6(1):e16214</Citation><ArticleIdList><ArticleId IdType="pubmed">21283709</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2011;12:145</Citation><ArticleIdList><ArticleId IdType="pubmed">21392393</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2011 Apr;20(8):1702-16</Citation><ArticleIdList><ArticleId IdType="pubmed">21375634</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 2011 May;188(1):197-214</Citation><ArticleIdList><ArticleId IdType="pubmed">21385726</ArticleId></ArticleIdList></Reference><Reference><Citation>J Mol Evol. 2008 Aug;67(2):222-32</Citation><ArticleIdList><ArticleId 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Cooke</name><name sortKey="Lepage, Pierre" sort="Lepage, Pierre" uniqKey="Lepage P" first="Pierre" last="Lepage">Pierre Lepage</name><name sortKey="Mackay, John J" sort="Mackay, John J" uniqKey="Mackay J" first="John J" last="Mackay">John J. Mackay</name></noCountry><country name="Canada"><noRegion><name sortKey="Rigault, Philippe" sort="Rigault, Philippe" uniqKey="Rigault P" first="Philippe" last="Rigault">Philippe Rigault</name></noRegion></country><country name="France"><region name="Languedoc-Roussillon"><name sortKey="Bousquet, Jean" sort="Bousquet, Jean" uniqKey="Bousquet J" first="Jean" last="Bousquet">Jean Bousquet (allergologue)</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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